means.approximation package

Subpackages

• means.approximation.lna package
  • Submodules
  • Module contents
    • Linear Noise Approximation
• means.approximation.mea package
  • Submodules
    • Gamma moment closure
    • Log-normal moment closure
    • Normal moment closure
    • Scalar moment closure
    • MEA helper functions.
  • Module contents
    • Moment Expansion Approximation

Submodules

class means.approximation.approximation_baseclass.ApproximationBaseClass(model)

Bases: object

A class of explicit generators for ordinary differential equations required to simulate the model provided.

Initialise the approximation.

Parameters:model (Model) – Model to approximate

model

The model that is used in approximation

run()

Perform the approximation. Return a constructed ODEProblem object.

Returns:a constructed set of equations, encoded in ODEProblem object. Return type:ODEProblem

Module contents